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1

Discrete logic modelling as a means to link protein signalling networks with functional analysis of mammalian signal transduction

Saez-Rodriguez, Julio, Alexopoulos, Leonidas G, Epperlein, Jonathan, Samaga, Regina, Lauffenburger, Douglas A, Klamt, Steffen, Sorger, Peter K

Journal:

Molecular Systems Biology

Year:

2009

Language:

english

File:

PDF, 1.83 MB

english, 2009

2

Big science and big data in nephrology

Saez-Rodriguez, Julio, Rinschen, Markus M., Floege, Jürgen, Kramann, Rafael

Journal:

Kidney International

Year:

2019

File:

PDF, 1.12 MB

2019

3

Bringing data from curated pathway resources to Cytoscape with OmniPath

Ceccarelli, Francesco, Turei, Denes, Gabor, Attila, Saez-Rodriguez, Julio, Robinson, Peter

Journal:

Year:

2019

Language:

english

File:

PDF, 245 KB

english, 2019

4

Systems biology—An engineering perspective

A. Kremling, J. Saez-Rodriguez

Journal:

Journal of Biotechnology

Year:

2007

Language:

english

File:

PDF, 1.01 MB

english, 2007

5

Water Diffusion Into UV Inscripted Long Period Grating in Microstructured Polymer Fiber

Saez-Rodriguez, D., Cruz, J. L., Johnson, I., Webb, D. J., Large, M. C. J., Argyros, A.

Journal:

IEEE Sensors Journal

Year:

2010

Language:

english

File:

PDF, 880 KB

english, 2010

6

Evaluation of methods for modeling transcription factor sequence specificity

Weirauch, Matthew T, Cote, Atina, Norel, Raquel, Annala, Matti, Zhao, Yue, Riley, Todd R, Saez-Rodriguez, Julio, Cokelaer, Thomas, Vedenko, Anastasia, Talukder, Shaheynoor, Agius, Phaedra, Arvey, Aaro

Journal:

Nature Biotechnology

Year:

2013

Language:

english

File:

PDF, 2.05 MB

english, 2013

7

Logic-Based Models for the Analysis of Cell Signaling Networks

Morris, Melody K., Saez-Rodriguez, Julio, Sorger, Peter K., Lauffenburger, Douglas A.

Journal:

Year:

2010

Language:

english

File:

PDF, 2.95 MB

english, 2010

8

Corrections to “Light Modulation Based on Fiber Cladding Mode Coupling Between Concatenated Long-Period Gratings” [Feb 1 152-154]

Saez-Rodriguez, David, Cruz, J. L., Andres, M. V.

Journal:

IEEE Photonics Technology Letters

Year:

2011

Language:

english

File:

PDF, 84 KB

english, 2011

9

Q-Switch All-Fiber Laser Pulsed by High Order Modes

Saez-Rodriguez, D., Cruz, J. L., Diez, Antonio, Barmenkov, Yuri O., Andres, Miguel V.

Journal:

IEEE Photonics Technology Letters

Year:

2013

Language:

english

File:

PDF, 536 KB

english, 2013

10

Modeling Signaling Networks to Advance New Cancer Therapies

Saez-Rodriguez, Julio, MacNamara, Aidan, Cook, Simon

Journal:

Annual Review of Biomedical Engineering

Year:

2015

Language:

english

File:

PDF, 946 KB

english, 2015

11

Polarization effects in polymer FBGs: study and use for transverse force sensing

Hu, Xuehao, Saez-Rodriguez, David, Marques, Carlos, Bang, Ole, Webb, David J, Mégret, Patrice, Caucheteur, Christophe

Journal:

Year:

2015

Language:

english

File:

PDF, 2.25 MB

english, 2015

12

Aviation Fuel Gauging Sensor Utilizing Multiple Diaphragm Sensors Incorporating Polymer Optical Fiber Bragg Gratings

Marques, C. A. F., Pospori, A., Saez-Rodriguez, D., Nielsen, K., Bang, O., Webb, D. J.

Journal:

IEEE Sensors Journal

Year:

2016

Language:

english

File:

PDF, 978 KB

english, 2016

13

Mechanism-based biomarker discovery

Antoranz, Asier, Sakellaropoulos, Theodore, Saez-Rodriguez, Julio, G. Alexopoulos, Leonidas

Journal:

Drug Discovery Today

Year:

2017

Language:

english

File:

PDF, 807 KB

english, 2017

14

Alternative models for sharing confidential biomedical data

Guinney, Justin, Saez-Rodriguez, Julio

Journal:

Nature Biotechnology

Year:

2018

Language:

english

File:

PDF, 283 KB

english, 2018

15

How to find the right drug for each patient? Advances and challenges in pharmacogenomics

Kalamara, Angeliki, Tobalina, Luis, Saez-Rodriguez, Julio

Journal:

Current Opinion in Systems Biology

Year:

2018

Language:

english

File:

PDF, 1.17 MB

english, 2018

16

Footprint-based functional analysis of multiomic data

Dugourd, Aurelien, Saez-Rodriguez, Julio

Journal:

Current Opinion in Systems Biology

Year:

2019

Language:

english

File:

PDF, 1.18 MB

english, 2019

17

Dissecting the puzzle of life: modularization of signal transduction networks

J. Saez-Rodriguez, A. Kremling, E.D. Gilles

Journal:

Computers & Chemical Engineering

Year:

2005

Language:

english

File:

PDF, 440 KB

english, 2005

18

Localized lichen myxoedematosus (papular mucinosis) associated with morbid obesity: report of two cases

M. Sáez-Rodríguez, M. García-Bustínduy, A. López-Alba, A. Noda-Cabrera, F. Guimerá-Martín-Neda, S. Dorta-Alom, M. Escoda-García, E. Fagundo-González, R. Sánchez-González, A. Martín-Herrera, R. García-

Journal:

British Journal of Dermatology

Year:

2003

Language:

english

File:

PDF, 146 KB

english, 2003

19

Palmoplantar pustulosis associated with gastric Helicobacter pylori infection

M. Sáez-Rodríguez, A. Noda-Cabrera, M. García-Bustínduy, F. Guimerá-Martín-Neda, S. Dorta-Alom, M. Escoda-García, E. Fagundo-González, R. Sánchez-González, F. Rodríguez-García, R. García-Montelongo

Journal:

Clinical and Experimental Dermatology

Year:

2002

Language:

english

File:

PDF, 279 KB

english, 2002

20

Metastatic gastric cancer presenting as a solitary axillary cutaneous nodule

Miguel Sáez-Rodríguez, Marta García-Bustínduy, Antonio Noda-Cabrera, Francisco Guimerá-Martín-Neda, Sara Dorta-Alom, Marina Escoda-García, Eva Fagundo-González, Rosalba Sánchez-González, Cipriano San

Journal:

International Journal of Dermatology

Year:

2002

Language:

english

File:

PDF, 1.91 MB

english, 2002

21

The role of psychological factors in palmoplantar pustulosis

M Sáez-Rodríguez, A Noda-Cabrera, S Álvarez-Tejera, F Guimerá-Martín-Neda, S Dorta-Alom, M Escoda-García, E Fagundo-González, R Sánchez-González, R García-Montelongo, M García-Bustínduy

Journal:

Journal of the European Academy of Dermatology and Venereology

Year:

2002

Language:

english

File:

PDF, 98 KB

english, 2002

22

Fiber laser switched by a long period grating interferometer as an intra-cavity loss modulator

D. Sáez-Rodríguez, J.L. Cruz, Yu. O. Barmenkov, A. Díez, M.V. Andrés

Journal:

Optics Communications

Year:

2010

Language:

english

File:

PDF, 456 KB

english, 2010

23

Coincidental presentation of vitiligo and psoriasis in a patient with polyglandular autoimmune syndrome

M. Rodríguez-Martín, M. Sáez-Rodríguez, A. Carnerero-Rodríguez, R. Cabrera de Paz, M. Sidro-Sarto, N. Pérez-Robayna, R. Sánchez, M. García-Bustínduy, A. Martín-Herrera, A. Noda-Cabrera

Journal:

Clinical and Experimental Dermatology

Year:

2007

Language:

english

File:

PDF, 146 KB

english, 2007

24

Primary cutaneous mucormycosis: a diagnosis to consider

Marta García-Bustínduy, Francisco Guimerá-Martín-Neda, Antonio Noda, María Lecuona, Rosalba Sánchez-González, María José González de Mesa, Miguel Sáez-Rodriguez, Antonio Martín-Malagón, Rafael García-

Journal:

Journal of the European Academy of Dermatology and Venereology

Year:

1999

Language:

english

File:

PDF, 3.35 MB

english, 1999

25

Lichen striatus in an adult successfully treated with pimecrolimus cream

M Sáez-Rodríguez, M Rodríguez-Martín, A Carnerero-Rodríguez, M Sidro-Sarto, F Rodríguez-García, R Cabrera de Paz, F Guimerá, M García-Bustínduy, L Díaz-Flores, A Noda-Cabrera

Journal:

Journal of the European Academy of Dermatology and Venereology

Year:

2006

Language:

english

File:

PDF, 99 KB

english, 2006

26

Plantar collagenoma in a karate practitioner

M Rodríguez-Martín, M Sáez-Rodríguez, A Carnerero-Rodríguez, R Cabrera de Paz, M Sidro-Sarto, N Pérez-Robayna, M García-Bustínduy, F Rodríguez-García, R Sánchez, L Díaz-Flores, A Noda-Cabrera

Journal:

Journal of the European Academy of Dermatology and Venereology

Year:

2007

Language:

english

File:

PDF, 138 KB

english, 2007

27

Pustular allergic contact dermatitis from topical minoxidil 5%

M Rodríguez-Martín, M Sáez-Rodríguez, A Carnerero-Rodríguez, R Cabrera de Paz, M Sidro-Sarto, N Pérez-Robayna, F Guimerá, R Sánchez, M García-Bustínduy, A Noda-Cabrera

Journal:

Journal of the European Academy of Dermatology and Venereology

Year:

2007

Language:

english

File:

PDF, 98 KB

english, 2007

28

Simultaneous occurrence of neurofibromatosis type 5 and clustered incomplete tuberous sclerosis

M Rodríguez-Martín, M Sáez-Rodríguez, M García-Bustínduy, F Rodríguez-García, A Martín-Herrera, A Noda-Cabrera

Journal:

Journal of the European Academy of Dermatology and Venereology

Year:

2007

Language:

english

File:

PDF, 118 KB

english, 2007

29

Reactive pseudotumoural papular mucinosis: a new clinicopathological presentation?

M Sáez-Rodríguez, M Rodríguez-Martín, A Carnerero-Rodríguez, M Sidro-Sarto, N Pérez-Robayna, M García-Bustínduy, A Martín Herrera, A Noda Cabrera

Journal:

Journal of the European Academy of Dermatology and Venereology

Year:

2008

Language:

english

File:

PDF, 114 KB

english, 2008

30

An Unusual Case of Congenital Linear Eccrine Spiradenoma

Marina Rodríguez-Martín, Rosalba Sánchez González, Miguel Sáez-Rodríguez, M. García-Bustínduy, Antonio Martín-Herrera, Antonio Noda-Cabrera

Journal:

Pediatric Dermatology

Year:

2009

Language:

english

File:

PDF, 288 KB

english, 2009

31

A domain-oriented approach to the reduction of combinatorial complexity in signal transduction networks

Holger Conzelmann, Julio Saez-Rodriguez, Thomas Sauter, Boris N Kholodenko, Ernst D Gilles

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 401 KB

english, 2006

32

Visual setup of logical models of signaling and regulatory networks with ProMoT

Julio Saez-Rodriguez, Sebastian Mirschel, Rebecca Hemenway, Steffen Klamt, Ernst Dieter Gilles, Martin Ginkel

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 477 KB

english, 2006

33

A methodology for the structural and functional analysis of signaling and regulatory networks

Steffen Klamt, Julio Saez-Rodriguez, Jonathan A Lindquist, Luca Simeoni, Ernst D Gilles

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 1.20 MB

english, 2006

34

Structural and functional analysis of cellular networks withCellNetAnalyzer

Steffen Klamt, Julio Saez-Rodriguez, Ernst D Gilles

Journal:

BMC Systems Biology

Year:

2007

Language:

english

File:

PDF, 811 KB

english, 2007

35

Transforming Boolean models to continuous models: methodology and application to T-cell receptor signaling

Dominik M Wittmann, Jan Krumsiek, Julio Saez-Rodriguez, Douglas A Lauffenburger, Steffen Klamt, Fabian J Theis

Journal:

BMC Systems Biology

Year:

2009

Language:

english

File:

PDF, 1.75 MB

english, 2009

36

Modulation of coaxial modal interferometers based on long period gratings in double cladding fibers

Sáez-Rodríguez, D., Cruz, J. L., Diez, A., Andrés, M. V.

Journal:

Year:

2007

Language:

english

File:

PDF, 144 KB

english, 2007

37

In-fiber Fabry-Perot refractometer assisted by a long-period grating

Mosquera, L., Sáez-Rodriguez, D., Cruz, J. L., Andrés, M. V.

Journal:

Year:

2010

Language:

english

File:

PDF, 276 KB

english, 2010

38

Actively mode-locked fiber ring laser by intermodal acousto-optic modulation

Bello-Jiménez, M., Cuadrado-Laborde, C., Sáez-Rodríguez, D., Diez, A., Cruz, J. L., Andrés, M. V.

Journal:

Year:

2010

Language:

english

File:

PDF, 341 KB

english, 2010

39

Coupling between counterpropagating cladding modes in fiber Bragg gratings

Sáez-Rodriguez, D., Cruz, J. L., Díez, A., Andrés, M. V.

Journal:

Year:

2011

Language:

english

File:

PDF, 445 KB

english, 2011

40

Fiber laser with combined feedback of core and cladding modes assisted by an intracavity long-period grating

Sáez-Rodriguez, D., Cruz, J. L., Díez, A., Andrés, M. V.

Journal:

Year:

2011

Language:

english

File:

PDF, 437 KB

english, 2011

41

Treatment of perioral dermatitis with topical pimecrolimus

Marina Rodríguez-Martín, Miguel Sáez-Rodríguez, Ana Carnerero-Rodríguez, Fernando Rodríguez-García, Roberto Cabrera de Paz, Miriam Sidro-Sarto, Francisco Guimerá, Rosalba Sánchez, Marta García-Bustínd

Journal:

Journal of the American Academy of Dermatology

Year:

2007

Language:

english

File:

PDF, 568 KB

english, 2007

42

Self-induced paraffinoma in a schizophrenic patient

Marina Rodríguez-Martín, Miguel Sáez-Rodríguez, Jose Luis Carrasco, Ana Carnerero, Roberto Cabrera, Nuria Pérez-Robayna, Desiré Díaz Melián, Rosalba Sánchez, Marta García Bustínduy, Antonio Noda

Journal:

Journal of the American Academy of Dermatology

Year:

2007

Language:

english

File:

PDF, 299 KB

english, 2007

43

Congenital plaque-like glomangioma associated with superficial hypertrichosis

Marina Rodríguez-Martín, Rosalba Sánchez, Miguel Sáez-Rodríguez, Marta García-Bustínduy, Miriam Sidro, Nuria Pérez, Sorahaya González, Hugo Álvarez, Antonio Noda

Journal:

Journal of the American Academy of Dermatology

Year:

2008

Language:

english

File:

PDF, 492 KB

english, 2008

44

Múltiples pápulas amarillentas de aparición súbita

Marina Rodríguez-Martín, Miguel Sáez-Rodríguez, Marta García-Bustínduy, Roberto Cabrera De Paz, Antonio Martín-Herrera, Antonio Noda Cabrera

Journal:

Year:

2007

File:

PDF, 216 KB

2007

45

Sarcoidosis

Marina Rodríguez-Martín, M. Sáez-Rodríguez, M. García-Bustínduy, F. Guimerá, M. Sidro, N. Pérez, S. González, R. Sánchez, A. Martín-Herrera, A. Noda Cabrera

Journal:

Year:

2008

File:

PDF, 766 KB

2008

46

Nódulo umbilical como forma de presentación de una neoplasia ovárica

Sorahaya González Hernández, Marina Rodríguez-Martín, Miguel Sáez-Rodríguez, Marta García-Bustínduy, Antonio Martín-Herrera, Antonio Noda Cabrer

Journal:

Year:

2008

File:

PDF, 714 KB

2008

47

Multistability of signal transduction motifs

Saez-Rodriguez, J., Hammerle-Fickinger, A., Dalal, O., Klamt, S., Gilles, E.D., Conradi, C.

Journal:

IET Systems Biology

Year:

2008

Language:

english

File:

PDF, 455 KB

english, 2008

48

Primary cutaneous mucormycosis: a diagnosis to consider

Marta Garcı́a-Bustı́nduy, Francisco Guimerá-Martı́n-Neda, Antonio Noda, Marı́a Lecuona, Rosalba Sánchez-González, Marı́a José González de Mesa, Miguel Sáez-Rodriguez, Antonio Martı́n-Malagón, Rafael G

Journal:

Journal of the European Academy of Dermatology and Venereology

Year:

1999

Language:

english

File:

PDF, 803 KB

english, 1999

49

Creating and analyzing pathway and protein interaction compendia for modelling signal transduction networks

Daniel C Kirouac, Julio Saez-Rodriguez, Jennifer Swantek, John M Burke, Douglas A Lauffenburger, Peter K Sorger

Journal:

BMC Systems Biology

Year:

2012

Language:

english

File:

PDF, 1.03 MB

english, 2012

50

Transcriptional data: a new gateway to drug repositioning?

Iorio, Francesco, Rittman, Timothy, Ge, Hong, Menden, Michael, Saez-Rodriguez, Julio

Journal:

Drug Discovery Today

Year:

2013

Language:

english

File:

PDF, 571 KB

english, 2013

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